After initFiles and readEnrichment has been run. reSample computes a statistic value and a p-value for each chromosomes and for the whole genome.
object | An object to be updated. It is intended, an object returned by the readEnrichment function. |
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nSample | The number of resampling done by reSample for p-values computation (minimum is |
empiricPvalue | Compute PValue based on the null distribution ( |
sigThresh | Statistical threshold for signal (e.g., |
MAFpool | Either a numeric vector giving the breaks points of intervals into which SNP's MAF (Minor Allele Frequency) is to be split. |
onlyGenome | Compute resampling step for all chromosomes (default |
Return the object given in argument, updated by the resampling results.
if (interactive()) { data(toyEnrichment) reSample( object = toyEnrichment, nSample = 10, empiricPvalue = TRUE, MAFpool = c(0.05, 0.10, 0.2, 0.3, 0.4, 0.5), onlyGenome = TRUE ) toyEnrichment }