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Chromosome-class
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Class Chromosome |
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Enrichment-class
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An S4 class Enrichment |
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compareEnrichment()
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Compare enrichment analysis between two SNPs list |
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excludeSNP()
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Exclude SNPs from Enrichment analysis |
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getEnrichSNP
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Get all eSNP/xSNP which are enriched |
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initFiles()
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Initialize files for enrichment analysis |
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plot
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Plot method (S4) for Enrichment object |
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reSample
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Compute enrichment analysis on an Enrichment object |
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readEnrichment()
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Read and create EnrichmentRatio object |
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reset
|
Reset methods. |
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snpEnrichment
|
~ Overview: SNPs Enrichment Analysis With Sampling ~ |
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toyEnrichment
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Toy dataset with SNP data |
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transcript
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Transcript information in order to check the CIS status for SNPs |
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writeLD()
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Linkage Disequilibrium (LD) computation with PLINK |