~ Overview: SNPs Enrichment Analysis With Sampling ~

Implements classes and methods for large scale SNP enrichment analysis using a sampling approach (e.g. SNPs associated with genes expression in a GWAS signal).

Details

Implements classes and methods for large-scale SNP enrichment analysis (e.g., SNPs associated with genes expression in a GWAS signal).

Note

Internal data management in snpEnrichment use RefSNP (rs) IDs.

See also

• Overview: snpEnrichment

• Classes: Enrichment Chromosome

• Methods:

  • enrichment

  • chromosome

  • getEnrichSNP

  • plot

  • reSample

  • reset

• Functions:

  • initFiles

  • writeLD

  • excludeSNP

  • readEnrichment

  • compareEnrichment

Author

Maintainer: Mickaël Canouil mickael.canouil@cnrs.fr

Other contributors:

• Loic Yengo loic.yengo@cnrs.fr [contributor]